Make input file for NCD2 from VCF

Make input file for NCD2 from VCF

Usage

.vcf_ncd2(x, nind = nind, index.col = index.col, verbose = T)

Arguments

x

A data.table object generated from reading a VCF file with read_vcf.

nind

A vector containing the number of diploid individuals from each population to be used. The length of the vector should be equal to the number of populations being sampled.

index.col

First genotype column in VCF file.

verbose

Logical. Printed updates. Default is T.